Here we would assist you in choosing the best accounting software for online e-commerce business. After reading through it, you would be confident enough to know the most suitable accounting solution for your business that would just do the wonders. But before hitting on it directly, let us get some of the basics of accounting software features that are a must for online businesses and why you should have one.

What is generally a good accounting software? A good accounting software is the one that caters your needs in the most efficient way. Plus, you get all these features within your budget. So in our view, a good accounting software is the one that generally has cloud support, third-party integration available,  mobile-app support, upgradeable according to needs, offers free trial and has a subscription plan that suits your needs. The best accounting software is the one that excels in these features. Below, we have discussed in detail the features that your accounting software must have. Let’s see what those features are!       

Why must you have accounting software for an online business?

Only the big businesses don’t need to benefit from using accounting software for their online businesses. Even a small retailer, a sole proprietorship, and a small business owner can get a great deal from using accounting software. So here we are going to talk about some of the features. These features make the accounting software so attractive to use.

First, the accounting software is fairly easy to use. You don’t have to be an expert accountant to use this software. Most of the software comes with inbuilt tutorials. Tutorials would do the job for many. The ease of using these software make it attractive for many. Even those who avoid using technology in their daily lives would find it amusing to use accounting software. That is because of its simple and effective interface and usage.

Second, these software are so handy when it comes to record, analyze, group, and manage transactions. They are quite helpful in keeping the record of the transactions, making summaries of them, and turning them into financial statements. They can be auto-tuned. You don’t have to worry about paying your liabilities on time. This saves a lot of time for you that can be utilized for research and development purposes.

Third, these accounting software also come up with sophisticated tools that are specifically built to serve online businesses. For instance, these tools can help you to look at what is the most people are looking for, where does your business strike the potential customers, how can you tap into customer’s psychology, how can you infiltrate into different geographical locations, etc. Such information can be really useful for you to understand the clients and can give a good boost to your businesses.

There are several other useful features but discussing them now would be wandering off from the main topic. Therefore, here we are summarizing the benefits of accounting software for you to get the idea of it:

·       They provide easy, cost-effective, and reliable solutions for your businesses

·       You can get help in timely payments, receipts, and keeping overall control of your assets and liabilities

·        Additional tools for research and development can be deployed

Alan Chen

Free 30-Min Strategy Session

By the end of this Strategy Session, you will have a clear understanding of the next steps you can take for your business to take advantage of the tax deductions you are missing out on.

·        Cloud-based solutions can be used anywhere without totally depending upon the hardware

·       You can get help and assistance to modify the software according to your needs

Best accounting software for online businesses

So now let’s talk about the best accounting software for your online businesses. We have picked up QuickBooks, Xero, FreshBooks, Sage 50 Cloud Accounting, Wave, and NetSuite as our top picks.

For the time being, these are the top picks for accounting software for online e-commerce businesses. The list is not exhaustive and there are several other amazing accounting software available too. And it is not essential that these software would be always on the top. Every other day market comes up with new solutions and software that are just as amazing as the top-rated software but for the time being, these are the most reliable and workable solutions we have. So let’s take look at each of these softwares.


za087ZAAMGnMiulLylm0lmH0ocq nn Q 1MUdTUKC

QuickBooks is one of the most sought-after software when it comes to having an accounting solution for your online e-commerce business. It has got a simple, flexible, and elegant interface that would do the basic bookkeeping job in one place. Plus, its functions can be separately modified according to the needs of the business. You can add payroll, inventory, and other sophisticated functions for your business. It is a cloud-based solution so that you don’t have to rely on the hardware. Plus, the most interesting is the availability of the mobile app. Another advantage is that it allows integration with different e-commerce platforms. And that too in a very smooth way.

It is subscription-based software. You can subscribe to the plan that suits you the most. Plus you can get a customized plan as well allowing you maximum flexibility when it comes to the payment. QuickBooks is generally built for professionals but that doesn’t mean you a layman cannot use it. QuickBooks has plenty of training material and resources which means that anyone with a basic understanding of computer systems and accounting principles, can master it within no time. So you can skip the cost of employing a permanent accountant. 

It is quite suitable for small businesses that want to sell online. It is also suitable for those businesses which have a solely online presence. However, as the business grows, you might need to upgrade and that might be an additional expense.  But this upgrade would also come with the most advanced and sophisticated features that would help you in making complex business analyses just by few clicks.


The next on our list is Xero. It is also one of the most reviewed and liked e-commerce software for many businesses. It typically suits micro or small businesses but now with the expandable base, it can be utilized for medium to large organizations as well. As with QuickBooks, it also has a mobile app and a cloud-based server so you don’t have to worry about carrying your hardware everywhere with you. It can fully integrate with some of the third-party apps. You should check if it integrates with your e-commerce platform. It allows you simple inventory management.

It has different subscription plans. These are early, growing, and advanced. The early plan allows limited invoices and transactions while growing and the advanced plan offer unlimited transactions. The established subscription plan also gives features of multiple currencies and various reports such as a cost-benefit report, expense managing report, etc.

Xero is simple and elegant but is suitable for small businesses. So if you have a small business or you have just kicked off a small business, this software might come quite handy for you. But in case the volume and day-to-day workings of the business have become complex, you might need to upgrade it towards more suitable software such as Sage 50 Cloud or QuickBooks.


743MLs 7qAFQIPlu83949ct4QbMhvVTmD 484zPZ1BuRjIfSGqivJz1Jsi6v2y QypMfp lHKDvGrTrBsfe4BB5W1SgeCsfM88QyAYfdGuFg4ei0OMto Fd aMjF1dyz8XTy4NIM

The next one to be reviewed is FreshBooks. This is a software that suits those who are providing online services as it does not provide other modules such as inventory, payroll, etc., so for those individuals or teams who are producing online content on YouTube, WordPress, or another social media platform, this software would do the job. It is simple and is used for invoicing. The software allows you to keep track of your invoices, payments, and debtors’ report with several options of auto-payments/receipts.

As with other softwares discussed above, FreshBooks is also a cloud-based software with a mobile app available. Plus, it supports integration with different e-commerce platforms such as Shopify, PayPal, Stripe, and many others. The app has got a simple and user-friendly interface and can be used by anyone who doesn’t even have basic accounting knowledge.

Freshbooks render different subscription plans, discounts, offers, and promotions. It is indeed a cost-effective solution for many. Yet some might find it too basic for their businesses and would need the support of other accounting software to effectively run their e-commerce businesses.

Sage 50 Cloud Accounting

n NkU7PmAw5n6MjAB8EprqvkhWacZcMe3mJHOnvjyfsLniFpr7uDWN9K5E9kqIx4zUIw73nmAHOV4bJNflotT6lcNh Z1e4DVXJPKT UAPCHjG 2Z4WpaWy6Al0LI2S8B9E4hGL

Sage 50 Cloud Accounting is a complete package for small to medium-sized enterprises that deal in eCommerce. It has got all the essential modules and functions to run the operations smoothly. Payroll, inventory, creditor’s management, debtor’s management, financial reports, cash flow forecasts, etc. all the functions can be performed in one place. It also allows integration with third-party apps making it more flexible and compatible.

Professionals usually use Sage 50 cloud accounting. So for a layman, it might seem a bit technical to use at the start. But with numerous pieces of training and tutorials available, anyone can learn it within a few weeks. The complexity involved in using the software is the reason many new users avoid it. Bur for developers and professionals, it is nothing less than a wonderful solution to their queries. For developers, it allows several features to do complex accounting and calculations. 

It is a cloud-based app. It has three different versions that users can subscribe to. These are pro accounting, premium accounting, and quantum accounting. Pro accounting $46.83/ month 1 user. Premium accounting 72.41/ month 1-5 users. Quantum accounting at $182.91/month for up to 40 users.


Ps41gzvLRv5SRBnT x5MkcBS65Iklg 4ibDNcWhPRL5msFXRAQ8VTKsq0Qly9gHM3RR1YqVdr9UV lUG0r5JHAeZ4YuKeFJKjgbFFUXf12grvAXEQLIqw1n Sl2zrEK LSpDHG4N

Amongst the software discussed in this blog, Wave is the only software that provides a free basic plan. It is a simple accounting software mostly used for tracking invoices. It doesn’t offer a payroll or inventory management module. However, users can upgrade it to include other modules as needed.

It is a cloud-based software with a mobile app. With a simple interface and with the availability of all basic accounting functions, it is quite suitable for those who are just kicking off their online e-commerce business. But it is suitable for businesses that provide services rather than those businesses that provide products. The reason is that it doesn’t come up with an inventory management module.

Another attractive feature of the app is that it is quite simple to use. So you don’t need to hire an expert or be an accountant yourself to do an e-commerce business. The app takes good care of it. Another feature that makes it likable is being free. You can get a good experience of using accounting software and that would come handy in case you chose another software later.

Wave charges fees on the payments made through it. Plus, it can also offer a payroll module at $20/month with 6$/employee. When it comes to third-party integration apps, it has limited support there. It does not support extensive third-party integration.


NetSuite is a complete accounting package that can cover all your accounting needs in one place. From recording a transaction to managing your complete supply chain, the software has got all the paraphernalia to do these tasks inefficient way. It can also help you with planning and decision-making. It can serve the complex accounting structure of your organization.

NetSuite suits large-sized organizations. These organizations are multinational and work in different geographic and demographic locations. It is, therefore, rather an expensive solution as compared to the other apps discussed in the blog. It is a cloud-based solution, with multiple third-party integration options. A business can purchase more options/ modules as they need it. However, being a complex app, there is no mobile app available for it.

NetSuite requires a professional and skilled person to use it. This is another drawback of it. Not everyone can use this software. People need training to use the software properly.

It offers a free trial. But after that, you will have to purchase it. There are different subscription models available.



Here we have discussed the best accounting software for online e-commerce businesses. But you must keep that in mind that the list is not exhaustive. There are several other accounting software too. But discussing them would make it cumbersome to decide which to choose. And if you still think, there is something more needed to make the decision, our experts are there to help you out. Plus, do you know that our experts can help you in saving your taxes up to  50,000 USD? Why don’t you just visit our site and see what we have got for you?

Q9zV4rR0TqZsUCZ8eukTUBd9uZmutdciLIgr3f4oW93 immuAbwMp1fKmV WLorX

Free E-book for E-Commerce Entrepreneurs

9 Most Crucial eCOM Tax Deducations The IRS Doesn’t Want You to Know

Explore More

Boost Your E-Commerce Business Now

drop us a line and keep in touch

Take Less Than 60 Seconds To Share What You Love

Alan Chen

Schedule Your Call with Alan!

Hate working with accountants that don’t understand your online business?

By the end of this Strategy Session, you will have a clear understanding of the next steps you can take.

 This Call Is Completely FREE.

Have Urgent Questions You Need Answered?

Book a FREE consultation call with Alan and talk to a CPA who actually understands and cares for your business.

Alan Chen